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CITATION.cff
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# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
cff-version: 1.2.0
title: AlphaFind
message: >-
If you use this software, please cite it using the
metadata from this file.
type: software
authors:
- given-names: Terézia
family-names: Slanináková
email: [email protected]
affiliation: >-
Institute of Computer Science, Masaryk University,
Brno, 602 00, Czech Republic
orcid: 'https://orcid.org/0000-0003-0502-1145'
credit: 0.4
- given-names: David
family-names: Procházka
email: [email protected]
orcid: 'https://orcid.org/0009-0000-2765-8329'
affiliation: >-
Faculty of Informatics, Masaryk University, Brno, 602
00, Czech Republic
credit: 0.4
- given-names: Jakub
family-names: Čillík
email: [email protected]
affiliation: >-
Institute of Computer Science, Masaryk University,
Brno, 602 00, Czech Republic
orcid: 'https://orcid.org/0009-0001-7780-3317'
credit: 0.2
identifiers:
- type: doi
value: 10.5281/zenodo.11085862
- type: url
value: 'https://alphafind.fi.muni.cz/'
- type: url
value: 'https://github.com/Coda-Research-Group/AlphaFind/'
repository-code: 'https://github.com/Coda-Research-Group/AlphaFind/'
url: 'https://alphafind.fi.muni.cz/'
repository-artifact: >-
https://data.narodni-repozitar.cz/general/datasets/egsm2-7a369
abstract: >-
AlphaFind is a web-based search engine that allows for
structure-based search of the entire AlphaFold Protein
Structure Database. Uniprot ID, PDB ID, or Gene Symbol is
accepted as input – the engine will return the most
similar proteins found within AlphaFold DB, with an option
for additional search to extend and refine the results.
The search results are grouped by their source organism
and displayed along with several similarity metrics. 3D
visualizations of the structural superposition of the
proteins are provided, and text filters can be used to
find specific organisms or Uniprot IDs. For details about
the methodology and usage, please see the manual. This
website is free and open to all users and there is no
login requirement.
keywords:
- similarity search
- protein similarity
- AlphaFold
- proteins
- web application
- AFDB
license: MIT
commit: 976511d1ad489b222346bc81e1d89ad49d388924
version: 1.0.0
date-released: '2024-04-29'