DESCRIPTION

Package: VoltRon
Type: Package
Title: VoltRon for Spatial Data Integration and Analysis
Version: 1.0.0
Depends: R (>= 4.3.0)
Author: Artür Manukyan, Ella Bahry, Deborah Schmidt, Markus Landthaler, Altuna Akalin
Maintainer: Artur Manukyan <artur-man@hotmail.com>
Description: VoltRon is a novel spatial omic analysis toolbox for multi-omics integration using spatial image registration. VoltRon is capable of analyzing multiple types and modalities of spatially-aware datasets. VoltRon visualizes and analyzes regions of interests (ROIs), spots, cells and even molecules.
License: MIT + file LICENSE
SystemRequirements: OpenCV 4.7 (or higher): libopencv-dev (Debian, Ubuntu) or opencv-devel (Fedora)
Encoding: UTF-8
RoxygenNote: 7.3.2
biocViews:
Imports: methods, S4Vectors, EBImage, FNN, Matrix, dplyr, ggforce, 
         ggplot2, ggpubr, ggrepel, hdf5r, igraph, irlba, rjson, magick, 
         reshape2, rlang, scales, shiny, shinyjs, stringr, uwot, data.table, 
         RCDT, basilisk, reticulate, sp, ids, waiter, rstudioapi, htmltools
LinkingTo: Rcpp, RcppArmadillo (>= 0.4)
Collate: 
    'RcppExports.R'
    'annotation.R'
    'zzz.R'
    'assay.R'
    'auxiliary.R'
    'generics.R'
    'clustering.R'
    'conversion.R'
    'data.R'
    'deconvolution.R'
    'differentialexpression.R'
    'image.R'
    'import.R'
    'integration.R'
    'interactive.R'
    'metadata.R'
    'objects.R'
    'processing.R'
    'registration.R'
    'sample.R'
    'spatial.R'
    'visualization.R'
Suggests:
    SpatialExperiment,
    SingleCellExperiment,
    Seurat,
    SeuratObject,
    DESeq2,
    MuSiC,
    spacexr,
    RBioFormats,
    XML,
    ComplexHeatmap,
    xlsx,
    tiledb,
    tiledbsc,
    vitessceR,
    testthat (>= 3.0.0),
    geojsonR,
    DelayedArray,
    circlize,
    anndataR,
    anndata
Config/testthat/edition: 3
LazyData: true
LazyDataCompression: gzip