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macos tests failing due to h5py #806

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karllark opened this issue May 14, 2024 · 1 comment
Open

macos tests failing due to h5py #806

karllark opened this issue May 14, 2024 · 1 comment
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@karllark
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The automated github macos tests are failing as there is an upstream issue with installing h5py.

Need to have someone with a mac test installing h5py in a new conda env to see if we can replicate the h5py install failure. And then find a fix.

@karllark karllark added the bug label May 14, 2024
@karllark
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Failing test at:
https://github.com/BEAST-Fitting/beast/actions/runs/9210375923/job/25337239061?pr=799

`py310-alldeps: install_package_deps> python -I -m pip install Cython asdf astropy dust-extinction graphviz h5py matplotlib pandeia.engine photutils pytest-astropy scipy shapely stsynphot tables tqdm
error: subprocess-exited-with-error

× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> [12 lines of output]
/var/folders/2f/8t5k6yr535sdw0s4glnpxrzm0000gn/T/H5close741qslhy.c:1:10: fatal error: 'H5public.h' file not found
#include "H5public.h"
^~~~~~~~~~~~
1 error generated.
cpuinfo failed, assuming no CPU features: 'flags'
* Using Python 3.10.11 (v3.10.11:7d4cc5aa85, Apr 4 2023, 19:05:19) [Clang 13.0.0 (clang-1300.0.29.30)]
* Found cython 3.0.10
* USE_PKGCONFIG: True
.. ERROR:: Could not find a local HDF5 installation.
You may need to explicitly state where your local HDF5 headers and
library can be found by setting the HDF5_DIR environment
variable or by using the --hdf5 command-line option.
[end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.`

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