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Transpose resistance report #1

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dfornika opened this issue May 5, 2022 · 1 comment
Open

Transpose resistance report #1

dfornika opened this issue May 5, 2022 · 1 comment

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@dfornika
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dfornika commented May 5, 2022

TBProfiler generates a resistance report that lists each drug on a separate row. This makes it a bit difficult to gather together resistance info from multiple samples. It would be convenient to have a resistance report that is structured to be one row per library.
@dfornika
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This script may be helpful for this:

https://github.com/Public-Health-Bioinformatics/galaxy_tools/blob/tbprofiler_json_to_tabular/tools/tbprofiler_json_to_tabular/tbprofiler_json_to_tabular.py

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